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Isolation of HLA-DR-naturally presented peptides identifies T-cell epitopes for rheumatoid arthritis
  1. Jaxaira Maggi1,
  2. Montserrat Carrascal2,
  3. Lilian Soto1,3,
  4. Oscar Neira4,
  5. María C Cuéllar4,
  6. Octavio Aravena1,
  7. Eddie A James5,
  8. Joaquin Abian2,
  9. Dolores Jaraquemada6,
  10. Diego Catalan1,
  11. Juan C Aguillón1
  1. 1 Immune Regulation and Tolerance Research Group, Programa Disciplinario de Inmunología, Instituto de Ciencias Biomédicas (ICBM), Universidad de Chile Facultad de Medicina, Santiago, Chile
  2. 2 Biological and Environmental Proteomics Group, IIBB-CSIC, IDIBAPS, Barcelona, Spain
  3. 3 Departamento de Medicina, Unidad del Dolor, Hospital Clinico de la Universidad de Chile Jose Joaquin Aguirre, Santiago, Chile
  4. 4 Servicio de Reumatología, Hospital del Salvador, Universidad de Chile, Santiago, Chile
  5. 5 Translational Research Program, Benaroya Research Institute, Seattle, Washington, USA
  6. 6 Immunology Unit, Cell Biology, Physiology and Immunology Department, Institut de Biotecnologia i Biomedicina, Universitat de Barcelona, Barcelona, Spain
  1. Correspondence to Dr Juan C Aguillón, Immune Regulation and Tolerance Research Group, Programa Disciplinario de Inmunología, Instituto de Ciencias Biomédicas (ICBM), Universidad de Chile Facultad de Medicina, Santiago, Chile; jaguillo{at}med.uchile.cl; Dr Diego Catalan; dfcatalan{at}med.uchile.cl

Abstract

Objective Rheumatoid arthritis (RA) immunopathogenesis revolves around the presentation of poorly characterised self-peptides by human leucocyte antigen (HLA)-class II molecules on the surface of antigen-presenting cells to autoreactive CD4 +T cells. Here, we analysed the HLA-DR-associated peptidome of synovial tissue (ST) and of dendritic cells (DCs) pulsed with synovial fluid (SF) or ST, to identify potential T-cell epitopes for RA.

Methods HLA-DR/peptide complexes were isolated from RA ST samples (n=3) and monocyte-derived DCs, generated from healthy donors carrying RA-associated shared epitope positive HLA-DR molecules and pulsed with RA SF (n=7) or ST (n=2). Peptide sequencing was performed by high-resolution mass spectrometry. The immunostimulatory capacity of selected peptides was evaluated on peripheral blood mononuclear cells from patients with RA (n=29) and healthy subjects (n=12) by flow cytometry.

Results We identified between 103 and 888 HLA-DR-naturally presented peptides per sample. We selected 37 native and six citrullinated (cit)-peptides for stimulation assays. Six of these peptides increased the expression of CD40L on CD4 +T cells patients with RA, and specifically triggered IFN-γ expression on RA CD4 +T cells compared with healthy subjects. Finally, the frequency of IFN-γ-producing CD4 +T cells specific for a myeloperoxidase-derived peptide showed a positive correlation with disease activity.

Conclusions We significantly expanded the peptide repertoire presented by HLA-DR molecules in a physiologically relevant context, identifying six new epitopes recognised by CD4 +T cells from patients with RA. This information is important for a better understanding of the disease immunopathology, as well as for designing tolerising antigen-specific immunotherapies.

  • Arthritis, Rheumatoid
  • Synovial fluid
  • T-Lymphocyte subsets
  • Autoimmunity

Data availability statement

All data relevant to the study are included in the article. All data relevant to the study are included in the article or uploaded as online supplemental information.

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Data availability statement

All data relevant to the study are included in the article. All data relevant to the study are included in the article or uploaded as online supplemental information.

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Footnotes

  • Handling editor Josef S Smolen

  • Twitter @jcaguillo

  • Contributors JCA, DC and JM participated in the conception and design of the study. JM, MC, DC, JCA, OA, JA, DJ and EJ worked on analysis and interpretation of data. JM, DC and JCA participated in manuscript preparation and redaction. JM, MC and EJ performed experiments and data acquisition. LS, ON and MC participated in the recruitment of subjects for this study. JCA acts as guarantor.

  • Funding This study was funded by the following grants: Fondecyt 1181853, Fondef-IDeA ID15I10080; Fondef-IDeA ID15I20080, Fondef-IDeA ID18I10243, and REDES 180028, from ANID, Chile; and by Project RTI2018-097414-B-I00 from the Spanish Ministry of Science. Doctoral training of JM was supported by ANID-PFCHA/National Doctoral Scholarship 2018/No 21181538.

  • Competing interests JCA reported five grants from Agencia Nacional de Investigación y Desarrollo (ANID), Chile, as financial support for this study; DJ reported one grant from the Spanish Ministry of Science; and JM reported a scholarship for her Doctoral training from ANID, during the conduct of the study.

  • Patient and public involvement Patients and/or the public were not involved in the design, or conduct, or reporting, or dissemination plans of this research.

  • Provenance and peer review Not commissioned; externally peer reviewed.

  • Supplemental material This content has been supplied by the author(s). It has not been vetted by BMJ Publishing Group Limited (BMJ) and may not have been peer-reviewed. Any opinions or recommendations discussed are solely those of the author(s) and are not endorsed by BMJ. BMJ disclaims all liability and responsibility arising from any reliance placed on the content. Where the content includes any translated material, BMJ does not warrant the accuracy and reliability of the translations (including but not limited to local regulations, clinical guidelines, terminology, drug names and drug dosages), and is not responsible for any error and/or omissions arising from translation and adaptation or otherwise.