Linkage disequilibrium between SNPs associated with glycosylation and SNPs in the same loci previously associated with RA
| Chr | SNPs associated with glycosylation (9) | Locus | SNP associated with RA (reference) | r2 | D′ |
|---|---|---|---|---|---|
| 5 | Rs17348299 | IL6ST-ANKRD55 | rs71624119 | 0.003 | 0.214 |
| rs7731626 | 0.002 | 0.149 | |||
| Rs6859219 | 0.001 | 0.167 | |||
| 9 | Rs12342831 | B4GALT1 | rs11574914 (RA locus named CCL19-CCL21) | 0 | 0.011 |
| 22 | Rs909674 | SYNGR1-TAB1-MGAT3-CACNA1 | rs909685 (RA locus named SYNGR1) | 0.108 | 0.848 |
| 6 | Rs404256 | BACH2 | rs72928038 | 0 | 0.023 |
Linkage disequilibrium was calculated in an independent dataset of 4861 European samples where data was available for >55 000 SNPs.
Chr, chromosome; RA, rheumatoid arthritis.